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ncbi non redundant nr protein database  (Biotechnology Information)

 
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    Biotechnology Information ncbi non redundant nr protein database
    Ncbi Non Redundant Nr Protein Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Functional Assay:

    Article Title: Characterization of the full-length transcriptome of female Eucoleus annulatus and comparative transcriptomic analysis of its head, middle, and tail body sections
    Article Snippet: .. Non-redundant FLNC transcripts were submitted to public databases for functional annotation, including the Clusters of Orthologous Groups/Eukaryotic Orthologous Groups (COG/KOG) database ( http://www.ncbi.nlm.nih.gov/COG ), Gene Ontology (GO) database, National Center for Biotechnology Information (NCBI) non-redundant protein (Nr) database, Kyoto Encyclopedia of Genes and Genomes (KEGG) database ( http://www.genome.jp/kegg ), evolutionary genealogy of genes (eggNOG) database ( http://eggnog5.embl.de/ ), and Pfam database ( https://pfam.xfam.org/ ). ..

    Article Title: Characterization and Application of Almond-Derived Bacterial Endophytes
    Article Snippet: .. Prokka software was used for genome annotation (Seemann, 2014), and functional annotation was done by aligning the sequence with sequences previously deposited in diverse protein databases, including: the National Center for Biotechnology Information (NCBI) non-redundant protein (Nr) database, UniProt/Swiss-Prot, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Cluster of Orthologous Groups of proteins (COG). ..

    Software:

    Article Title: Characterization and Application of Almond-Derived Bacterial Endophytes
    Article Snippet: .. Prokka software was used for genome annotation (Seemann, 2014), and functional annotation was done by aligning the sequence with sequences previously deposited in diverse protein databases, including: the National Center for Biotechnology Information (NCBI) non-redundant protein (Nr) database, UniProt/Swiss-Prot, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Cluster of Orthologous Groups of proteins (COG). ..

    Sequencing:

    Article Title: Characterization and Application of Almond-Derived Bacterial Endophytes
    Article Snippet: .. Prokka software was used for genome annotation (Seemann, 2014), and functional annotation was done by aligning the sequence with sequences previously deposited in diverse protein databases, including: the National Center for Biotechnology Information (NCBI) non-redundant protein (Nr) database, UniProt/Swiss-Prot, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Cluster of Orthologous Groups of proteins (COG). ..



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    ncbi non redundant nr protein database  (Biotechnology Information)
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    Biotechnology Information ncbi non redundant nr protein database
    Ncbi Non Redundant Nr Protein Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ncbi non redundant protein nr database  (Biotechnology Information)
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    ncbi non redundant protein sequences database nr  (Biotechnology Information)
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    Biotechnology Information ncbi non redundant protein sequences database nr
    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, <t>NCBI</t> ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
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    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, <t>NCBI</t> ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
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    ncbi non redundant protein sequence database nr  (Biotechnology Information)
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    Biotechnology Information ncbi non redundant protein sequence database nr
    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, <t>NCBI</t> ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
    Ncbi Non Redundant Protein Sequence Database Nr, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ncbi+non+redundant+protein+nr+database/database+ncbi+non+redundant/pmc12947448-178-10-8
    Average 86 stars, based on 1 article reviews
    ncbi non redundant protein sequence database nr - by Bioz Stars, 2026-09
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    ncbi non redundant protein database nr  (Biotechnology Information)
    86
    Biotechnology Information ncbi non redundant protein database nr
    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, <t>NCBI</t> ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
    Ncbi Non Redundant Protein Database Nr, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ncbi+non+redundant+protein+nr+database/database+ncbi+non+redundant/10__3390_slash_fishes11010023-75-27-25
    Average 86 stars, based on 1 article reviews
    ncbi non redundant protein database nr - by Bioz Stars, 2026-09
    86/100 stars
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    Image Search Results


    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, NCBI ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.

    Journal: bioRxiv

    Article Title: An enzyme-level benchmark based on environmental bacterial laccases for predicting contaminant fate in water

    doi: 10.64898/2026.01.27.701970

    Figure Lengend Snippet: (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, NCBI ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.

    Article Snippet: The National Center for Biotechnology Information (NCBI) non-redundant protein sequences database (nr) was queried using BLASTP with the above-listed stringent homology parameters, resulting in 960 unique protein sequences.

    Techniques: Environmental Sampling